We evaluated the molecular mechanism underlying this delaying fruit ripening by performing RNA-sequencing analysis of tomato fruits at 6 h, 2 days (d), 5 d and 7 d after 1 kHz sound vibration treatment.

We demonstrate that tomato plants can develop a chilling acclimation response and document the comprehensive transcriptomic and metabolic adjustments leading to the increase in chilling tolerance

To define the changes during development and the response of different stages to elevated temperatures we investigated the transcriptome and proteome of pollen at tetrad, post-meiotic and mature stage before and after application of elevated temperatures.

Transcriptome of Solanum lycopersicum cv. Ailsa Craig and its nearly isogenic hp1 fruit at four different developmental stages which includes Immature Green, Mature Green, Breaker and Breaker + 7.

Using the cultivated tomato 'Moneymaker' as materials, we analyzed the transcriptome of the ovule and the ovary wall dissected from the different stages of the early developing fruits.

Transcriptome analysis of a series of flower buds harvested from an inflorescence of Solanum lycopersicum cv. Micro-Tom (MT-J, TOMJPF00001). Six flower buds ranging from a day-1 bud (4 mm in length) to a day-7 bud (partially opening) defined in the referenced publication were analyzed. The plant was grown under a fluorescent white light (170 micro mol/s/m2) with a photoperiod of 16 hours light and 8 hours darkness at 25 degree.

"Tomato (Solanum lycopersicum) is an established model for studying fruit biology. However, most studies of tomato fruit growth and ripening are based...
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The study provides new insights for practitioners aiming to enhance their experimental designs for RNA seq

Whole transcriptome sequencing of different organs from Solanum lycopersicum Micro-Tom : Flower, Bud, Fruit.

RNA sequencing analyses allowed identifying several structural and regulator genes putatively involvedin ascorbate and phenylpropanoids biosynthesis in tomato fruits

The molecular genetic program for root hair development has been studied intensively in Arabidopsis (Arabidopsis thaliana). To understand the extent to...
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Enlargement and doming of the shoot apical meristem (SAM) is a hallmark of the transition from vegetative growth to flowering. While this change is widespread,...
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To explore the effects of three loci flowers at 2, 4, 8, 10, 13, and 16 days after floral initiation were collected from four genotypes of plants: WT, sun, ovate, fs8.1 single NILs. Meristems and flower buds were dissected by micro-dissecting forceps under a dissecting microscope.

Transcriptome profiling of tomato inflorescence and floral meristems, flowers at 2, 4 and 6 days after floral initiation in wild species S. pimpinellifolium, LA1589 using Illumina RNA-seq. Inflorescence and floral meristems were collected together. Tissues were harvested within one hour (between 10-11 am) and stabilized in RNAlater (Ambion). Replicate 1 and 2 each represents about 100 meristems or flower buds from 5 plants in the field. Replicate 3 and 4 were from a single plant in the greenhouse. Meristems and flower buds were dissected by micro-dissecting forceps under a dissecting microscope. Stand-specific libraries prepared from total RNA and sequences of 51 bp were generated on an Illumina HiSeq2000.

Root transcriptome profiling in chilling-sensitive tomato (S. lycopersicum cv. Moneymaker)

The transcriptional networks controlled by HsfA2 are examined in young leaves and anthers to dissect the functional relation of HsfA2 in different tissues by transcriptome analysis

Tomato RNA-Seq transcriptome data from different tissues and organs (flesh, peel, seeds, roots, leaves, buds and petals) and developmental stages (19 experiments in total)

Solanum lycopersicum simulated sun-shade and heteroblasty transcriptome

Using the cultivated tomato Moneymaker as materials, we analyzed the transcriptome of the ovule and the ovary wall dissected from the different stages of the early developing fruits.

Tomato plants are covered with epidermal secretory glandular trichomes and these structures accumulate a wide variety of plant secondary metabolites....
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Global genome expression changes caused by the ectopic expression of CsMYBF1, comparison of the gene expression profiles of the transgenic and wild type tomato fruits

The goal of this study was to search for DELLA-independent GA-regulated genes in tomato.

Study of the role of Argonaute1 (AGO1) in the development of compound leaves in tomato by virus-induced gene silencing (VIGS) strategy and global gene expression analysis

Laser-capture microdissection coupled to high-throughput RNA sequencing was used to analyze the transcriptome of ovaries and fruit tissues of the wild tomato species Solanum pimpinellifolium

Gene silencing of a single nuclear gene, MutS HOMOLOG1 (MSH1), in the tomato (Solanum lycopersicum) 'Rutgers' to effect developmental reprogramming of the plant

Hormone treatments during the ripening transition in tomato.

Heat shock proteins (Hsps) are molecular chaperones primarily involved in maintenance of protein homeostasis. Their function has been best characterized...
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To elucidate global gene expressions of tomato response to Abscisic acid (ABA), transcriptome profiles of the tomato (Solanumly copersicum) variety ‘Hongtaiyang 903’ under ABA-stress for one day were generate by using RNA-Seq technology.

Transcriptome profiling of tomato fruits of a FRUITFULL-suppressed line and rin mutant

Meloidogyne javanica Fatty Acid and Retinol Binding Protein (Mj-FAR-1) Affects the Expression of a Large Number of Lipid, Cell Wall, Stress and Phenylpropanoid Related Genes During Nematode Infection of Tomato - Strain Avigail

To understand the systemic effect of the fungal presence on the tomato fruit, we performed global transcriptome profiling through RNA-Seq analysis on...
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Effects of chronic, long-term heat stress on gene expression in tomato pollen

We sequenced mRNA from immature green (15 days after anthesis) and red (Breaker+10 days) tomato (Solanum lycopersicum) fruit tissues from plants over-expressing SlGLK1 and SlGLK2 and from control plants "M82" to compare gene expression levels between transgenic fruit and the control.

We sequence mRNA from Ailsa Craig tomato (Solanum lycopersicum) fruit tissues, taken in 6 stages during fruit development (10 days after anthesis, 20 days after antheis, mature green, breaker, breaker+5 days, breaker+10 days). The fruit were cut into 5 equal sections along the longitudinal axis of the fruit and the intervening two sections discarded to minimize developmental and gene expression overlap. Three remaning sections: top, middle, bottom were sequenced.

Lines nearly isogenic for SUN in the cultivated background Solanum lycopersicum c.v. SUN1642 were grown in the greenhouse in a completely randomized design....
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To identify differentially expressed genes in response to TYLCV infection, Strain CLN2777A

Transcriptome sequencing of tomato leaves treated with different bacteria and PAMPs, Rio Grande prf3

A comprehensive transcriptional profiling of immature fruits (14 DAP) , obtained from hp1 mutant plant in comparison to their isogenic wild-type Alisa Craig, dissects molecular mechanism by which HP1 (DDB1) affects the plastid level and other physiological processes of tomato fruits

Transcriptome analysis of a domesticated tomato species and five wild relatives: Solanum lycopersicum var. M82 LA3475, Solanum pennellii LA0716, Solanum habrochaites LA1777, Solanum pimpinellifolium LA1589, Solanum chmielewskii LA1840, Solanum galapagense LA0530.

Tomato is a model and economically important crop plant with little information available about gene expression in roots. Currently, there have only been...
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To examine cytokinin regulated gene expression at a transcriptome level in tomato leaves we shotgun sequenced messenger RNA with Illumina technology and...
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Study of the tomato mutant terminating flower ( tmf ). Early flowering and multiflowered inflorescence conversion into a solitary flower as a result of precocious activation of a conserved floral specification complex encoded by ANANTHA ( AN ) and FALSIFLORA ( FA )).

Transcriptome sequencing of various tissues of Solanum lycopersicum cv Heinz and S. pimpinellifolium

Gene expression dynamics from individual shoot meristem in tomato from vegetative state to a terminal flower

Transcriptomes of tomato fruits at four developmental stages, immature (17 DPA), mature green (39 DPA), breaker (42 DPA), and fully ripe (52 DPA), were analyzed using the RNA-seq approach.